INTRODUCTION

Microbiology is an integral part of many different scientific studies, such as immunology, genetics, molecular biology, biochemistry, medicine, agriculture, ecology, industrial processes and many more. People working in these fields use microbiology in their daily procedures, although they aren't microbiologists. Because of the wide range of its applications, understanding the basics of microbiology is in many ways essential to our completeness as biologists, no matter what field we may pursue. Microorganisms (in the context of this course) are minute living things that are individually too small to be seen with the naked eye. The term includes bacteria, microscopic fungi (yeasts and molds), protozoans, microscopic algae, prions and viruses. Microorganisms can be associated with many diseases, infections and inconveniences such as AIDS, pimples, and spoiled food. However, the majority of microorganisms make vital contributions to the world's inhabitants. They maintain the balance of chemicals and living organisms in the global environment. For example, the algae and cyanobacteria found in the oceans and waters of the globe are the major source of oxygen for living things. In many places microorganisms are the basis for the food chain. They help to recycle chemical elements in the land and water. Microorganisms also have been used for commercial benefits. Cultured microorganisms can be used to synthesize products more cheaply than they can be manufactured by other means (biotechnology). Microorganisms have also been used to produce products that have "always" been a part of our lives, such as vinegar, wine, sauerkraut, pickles, beer, green olives, soy sauce, buttermilk bread, cheese, yoghurt and other products. Today we accept that microorganisms are everywhere as an intrinsic part of our culture (most mothers will tell their children to beware of 'germs'), but in the past, when technology was not developed enough to detect them (no good microscopes), people had some odd theories of what caused life and disease.

HISTORY

Two theories of life; not necessarily mutually contradictory:

1. Spontaneous generation; 2. Cell theory and evolution (this came much later); which was right? In addition, there were a series of great debates that took over 3,000 years to be resolved, on the causations of diseases. Until the first question could be worked out, the causation of disease was unsolvable, except in some specific cases.
Usual causes for disease were "poisoned air" or "seeds of decomposition". However, some reliable medical data were collected and codified:
India, ~3,000 BC Ordinances of Manu men were warned about marrying into a family that was prone to tuberculosis, because they might then acquire the disease. This is a statement of the theory of contagion.
India ~ 1100 BC Veda explained about how to protect against smallpox by variolation, a more dangerous variant of vaccination.
India ~ 500 BC Bhagavata Purana describes the first signs of bubonic plague, and states that dying rats falling from the roofs are the first sign, showing a connection between animal and human diseases.
Rome ~ 14 - 37 AD Tiberius Claudius Nero Caesar reportedly banned kissing in Rome to stop the spread of oral herpes (cold sores) - another statement of the contagion theory.

{Other statements of microbiological and medical theory were known, but were very spotty in application and usefulness. For every "good" theory there were many useless or "bad" theories.}

Italy 1530 Syphilus Suffering from the French Disease - Girolamo Fracastoro described a sexually transmitted disease in a shepherd.
Italy 1546 About contagion and Contagious Diseases - Girolamo Fracastoro - Diseases were due to a contagion that could be transferred from one person to another by direct contact with the person or by touching objects contaminated by the afflicted person (fomites). Contagions were destructive particles whose heat, moisture or other characteristics caused destructive changes. Many contagions attack only specific animals or humans, or specific crops or trees, or specific organs of the body.
Holland 1650's Anton von Leeuwenhoek ground single lens microscopes and made the first observations of microorganisms in rain water, peppercorn infusions and teeth scrapings. It is possible that he first made and used the microscopes in his cloth importing and exporting business. In 1673 he sent the first in a series of letters to the Royal Society of London (England) about his findings.
England 1665 Robert Hooke used a compound microscope to observe thin slices of cork, among other things and coined the name "cells" to describe the pores he found in the cork. He was also important for many innovations in the development of microscopy.
Italy 1668 Francesco Redi demonstrated that maggots (fly larvae) do not arise spontaneously from decaying meat as was commonly believed. Three sealed jars and three open jars, all containing meat. All the meat decayed, but only the open jars produced maggots. The counter argument to this was that air was necessary for generation. A second experiment in which the open jars were covered with a fine net showed production of maggots on the net, but none on the meat, even though air was present. This was a blow to spontaneous generation, but many believed that the small "animalcules" observed by van Leeuwenhoek were simple enough to arise by spontaneous generation, and others believed that the experimental protocols disturbed the generative forces.
England 1745 John Needham showed that even boiled chicken broth or corn infusions sealed into covered flasks would become contaminated by microorganisms, giving strength to this latter view.
Europe 1700's variolation discovered from previous eastern writings and used to combat smallpox. It worked, but was dangerous.
Italy 1776 Lazzaro Spallanzani showed that Needham's results were due to microorganisms from the air, as broth boiled in a sealed flask remained free of contamination. Needham said that the "vital force" had been destroyed by heat and kept out of the flask by the seals.
England 1798 Edward Jenner used material from cowpox to vaccinate humans against smallpox.
France 1807Benedict Prevost found a fungus that caused a disease in wheat, and was the first to propose that disease was caused by living organisms.
Italy 1835 Agostino Bassi found a fungus that caused a disease in commercial silkworms.
Germany 1838 - 1839 Matthias Scheiden and Theodor Schwann proposed that all living creatures were composed of cells - the Cell Theory of life.
Germany 1839 J. Schoenlein and David Gruby found that a fungus caused chronic ringworm (such as athlete's foot - Tineia pedis).
Germany 1839 B. Lagenbeck found that a yeast caused thrush, a human mouth infection.
Germany 1840's - 1850 Ignaz Semmelweis, noted that in maternity wards where doctors didn't wash their hands after doing autopsies, there were many deaths in childbirth. When they were required to wash their hands with an antiseptic solution, the death rate decreased from 8.3% to 2.3%. He proposed that the doctors were carrying the disease on their hands and instruments: the Germ Theory of disease. For this he was dismissed from his post at the hospital, eventually went insane and died.
England 1845 J.M. Berkley characterized the fungus that causes potato blight (endemic in Ireland at the time).
France 1853Anton De Bary Described the fungi that cause plant smuts and rusts. Also described the life cycle of the fungus that causes potato blight.
Germany 1858 Rudolph Virchow proposed the concept of biogenesis: living cells can only arise from preexisting living cells.
England 1859 Charles Darwin presents a paper on the Origin of Species.
France 1860 Louis Pasteur, famous for founding polarimetry, was called in to discover the cause of the souring of beer and wine in France's beverage industries. Pasteur found that yeasts caused the fermentation of sugar to alcohol in the absence of air and other bacteria later caused a change to vinegar (sour acetic acid) in the presence of air. He invented a process of heating (pasteurization) to kill the bacteria after the yeast fermentation was complete.
France 1861 Louis Pasteur used his swan necked flask experiment to "kill" spontaneous generation - some of his flasks are still sterile. However this experiment isn't any better than Redi's or Spallanzani's in concept, and some of his flasks, in which he used a hay infusion actually became contaminated (due to bacterial spores about which nothing was known at the time), and it was a combination of his great prestige, the experiments, the wealth of accumulated data and the changing outlook of the times that killed the old theory. However, life on earth did begin as a form of spontaneous generation, although it is not observed now (why not?).
England 1860's Joseph Lister Used solution of carbolic acid (weak solutions of phenol) to treat wound dressings and decrease infection.
Austria 1864 Gregor Mendel published a paper on inheritance.
Germany 1876 Robert Koch proved (for the first time) that bacteria cause disease. A commercially important cattle disease, anthrax, was destroying many cattle. Koch found rod shaped bacteria (bacilli) in the dead tissues. He isolated them, grew them in media, reintroduced them in healthy cattle, saw them develop the disease and die, and then he reisolated the same bacterium from the newly dead cattle. He established Koch's postulates, which are still used today:

1. The specific microorganism thought to be causing a disease must be consistently isolated from the afflicted individuals, but not from healthy individuals.
2. The suspected causative agent must be cultivated in pure form outside the host in vitro.
3. Pure cultures of the suspected pathogen, when introduced into a susceptible host must produce the signs and symptoms characteristic of the disease.
4. The same organisms must be consistently isolated from the afflicted host and be grown in vitro in pure culture.

France ~1880 Louis Pasteur discovered the theory behind vaccination. Microorganisms grown in the laboratory for many years may lose or greatly decrease their virulence. However, they can still induce immunity against their virulent counterparts.